Thanks JOhn (@johnb), Spiros (@fiveten), and George (@gblair). I am happy with the way it turned out so far. However, one thing I don't have a good solution for yet is what to do when this type of mishap occurs and I am using a custom mix of paint.
Storing the mixed paint colors in a jar has several disadvantages. First, it's difficult to know how much you might need later and can be wasteful of paint if you mix extra and then never use it or it might set for a long time before you need it again. I haven't found a glass mixing jar jet that will keep paint mixed this way fresh enough to use some months later. And additionally, it costs money for these jars. I have started saving empty Tamiya paint jars which alleviates the mixing jar cost, so there is that option. But the main issue is the extra paint used which may go to waste.
Another issue, is that I normally lighten colors as I paint to get the multi-toned appearance, and it is impractical to store mixed copies of all these various shades. This may not be too big of a deal.
I am just trying to find a system that is easy and which works every time for mixing custom colors.
I am inclined to start using AK Real Colors or MRP or Vallejo paint sets, but I really like the way that Tamiya paints work. I just purchased some color test cards that I am going to use to brush and spray custom colors as well as different shades of paint from the manufacturer. The custom mix cards will have the formulas. We'll see how that works out.